xCell2

A Tool for Generic Cell Type Enrichment Analysis

Bioconductor version: 3.23 · Package version: 1.4.0

xCell2 provides methods for cell type enrichment analysis using cell type signatures. It includes three main functions - 1. xCell2Train for training custom references objects from bulk or single-cell RNA-seq datasets. 2. xCell2Analysis for conducting the cell type enrichment analysis using the custom reference. 3. xCell2GetLineage for identifying dependencies between different cell types using ontology.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("xCell2")