vsclust

Feature-based variance-sensitive quantitative clustering

Bioconductor version: 3.23 · Package version: 1.14.0

Feature-based variance-sensitive clustering of omics data. Optimizes cluster assignment by taking into account individual feature variance. Includes several modules for statistical testing, clustering and enrichment analysis.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("vsclust")

Details

Maintainer	Veit Schwammle <veits@bmb.sdu.dk>
Author	Veit Schwammle [aut, cre]
License	GPL-2
Downloads rank	241
Source branch	RELEASE_3_23
biocViews	Annotation, Clustering, DifferentialExpression, Metabolomics, PrincipalComponent, Proteomics, Software, Visualization

Documentation

Download

Source package

Dependencies

Depends: R (>= 4.2.0)

Imports: matrixStats, limma, parallel, shiny, qvalue, grDevices, stats, MultiAssayExperiment, clusterProfiler, DOSE, httr, graphics

LinkingTo: Rcpp

Suggests: knitr, yaml, testthat (>= 3.0.0), rmarkdown, BiocStyle, httr, magick