uncoverappLib
Interactive graphical application for clinical assessment of sequence coverage at the base-pair level
Bioconductor version: 3.23 · Package version: 1.22.0
a Shiny application containing a suite of graphical and statistical tools to support clinical assessment of low coverage regions.It displays three web pages each providing a different analysis module: Coverage analysis, calculate AF by allele frequency app and binomial distribution. uncoverAPP provides a statisticl summary of coverage given target file or genes name.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("uncoverappLib") Details
| Maintainer | Emanuela Iovino <emanuela.iovino@unibo.it> |
| Author | Emanuela Iovino [cre, aut], Tommaso Pippucci [aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/Manuelaio/uncoverappLib |
| Bug Reports | https://github.com/Manuelaio/uncoverappLib/issues |
| Downloads rank | 274 |
| Source branch | RELEASE_3_23 |
| biocViews | Annotation, Coverage, Software, Visualization |
Documentation
Download
Dependencies
Imports: markdown, shiny, shinyjs, shinyBS, shinyWidgets, shinycssloaders, DT, Gviz, Homo.sapiens, openxlsx, condformat, stringr, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, BiocFileCache, rappdirs, TxDb.Hsapiens.UCSC.hg19.knownGene, rlist, utils, S4Vectors, EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v86, OrganismDbi, processx, Rsamtools, GenomicRanges