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uncoverappLib

Interactive graphical application for clinical assessment of sequence coverage at the base-pair level

Bioconductor version: 3.23 · Package version: 1.22.0

a Shiny application containing a suite of graphical and statistical tools to support clinical assessment of low coverage regions.It displays three web pages each providing a different analysis module: Coverage analysis, calculate AF by allele frequency app and binomial distribution. uncoverAPP provides a statisticl summary of coverage given target file or genes name.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("uncoverappLib")

Details

MaintainerEmanuela Iovino <emanuela.iovino@unibo.it>
AuthorEmanuela Iovino [cre, aut], Tommaso Pippucci [aut]
LicenseMIT + file LICENSE
URLhttps://github.com/Manuelaio/uncoverappLib
Bug Reportshttps://github.com/Manuelaio/uncoverappLib/issues
Downloads rank274
Source branchRELEASE_3_23
biocViewsAnnotation, Coverage, Software, Visualization

Documentation

Download

Dependencies

Imports: markdown, shiny, shinyjs, shinyBS, shinyWidgets, shinycssloaders, DT, Gviz, Homo.sapiens, openxlsx, condformat, stringr, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, BiocFileCache, rappdirs, TxDb.Hsapiens.UCSC.hg19.knownGene, rlist, utils, S4Vectors, EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v86, OrganismDbi, processx, Rsamtools, GenomicRanges

Suggests: BiocStyle, knitr, testthat, rmarkdown, dplyr