transmogR

Modify a set of reference sequences using a set of variants

Bioconductor version: 3.23 · Package version: 1.8.1

transmogR provides the tools needed to crate a new reference genome or reference transcriptome, using a set of variants. Variants can be any combination of SNPs, Insertions and Deletions. The intended use-case is to enable creation of variant-modified reference transcriptomes for incorporation into transcriptomic pseudo-alignment workflows, such as salmon.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("transmogR")