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trackViewer

A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

Bioconductor version: 3.23 · Package version: 1.48.0

Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("trackViewer")

Details

MaintainerJianhong Ou <jou@morgridge.org>
AuthorJianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>), Julie Lihua Zhu [aut]
LicenseGPL (>= 2)
Downloads rank1043
Source branchRELEASE_3_23
biocViewsSoftware, Visualization

Documentation

Download

Dependencies

Depends: R (>= 3.5.0), grDevices, methods, GenomicRanges, grid

Imports: Seqinfo, GenomeInfoDb, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, S4Vectors, rtracklayer, BiocGenerics, scales, tools, IRanges, AnnotationDbi, grImport, htmlwidgets, InteractionSet, utils, rhdf5, strawr, txdbmaker

Suggests: biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, org.Hs.eg.db, BiocStyle, knitr, VariantAnnotation, httr, htmltools, rmarkdown, motifStack

Reverse dependencies

Imports Me (3): annoLinker, geomeTriD, NADfinder

Suggests Me (3): ATACseqQC, ChIPpeakAnno, MutSeqR