toppgene

Gene List Enrichment Analysis using the ToppGene Suite

Bioconductor version: 3.23 · Package version: 1.0.2

The ToppGene Suite is a one-stop portal for gene list enrichment analysis and candidate gene prioritization based on functional annotations and protein interactions network. Although the ToppCluster web application provides convenient graphical access to the ToppGene Suite, the OpenAPI 3.0 compliant interface of ToppGene is better suited for automation and reproducibility. This package includes Bioconductor class interfaces and biological examples.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("toppgene")