tomoseqr
R Package for Analyzing Tomo-seq Data
Bioconductor version: 3.23 · Package version: 1.16.0
`tomoseqr` is an R package for analyzing Tomo-seq data. Tomo-seq is a genome-wide RNA tomography method that combines combining high-throughput RNA sequencing with cryosectioning for spatially resolved transcriptomics. `tomoseqr` reconstructs 3D expression patterns from tomo-seq data and visualizes the reconstructed 3D expression patterns.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tomoseqr")Details
| Maintainer | Ryosuke Matsuzawa <kinakomochi.work@gmail.com> |
| Author | Ryosuke Matsuzawa [aut, cre] (ORCID: <https://orcid.org/0000-0003-2999-4734>) |
| License | MIT + file LICENSE |
| Downloads rank | 223 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneExpression, RNASeq, Sequencing, Software, Spatial, Transcriptomics, Visualization |