Bioc2026 Registration Open!

terraTCGAdata

OpenAccess TCGA Data on Terra as MultiAssayExperiment

Bioconductor version: 3.23 · Package version: 1.16.0

Leverage the existing open access TCGA data on Terra with well-established Bioconductor infrastructure. Make use of the Terra data model without learning its complexities. With a few functions, you can copy / download and generate a MultiAssayExperiment from the TCGA example workspaces provided by Terra.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("terraTCGAdata")

Details

MaintainerMarcel Ramos <marcel.ramos@sph.cuny.edu>
AuthorMarcel Ramos [aut, cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>)
LicenseArtistic-2.0
URLhttps://github.com/waldronlab/terraTCGAdata
Bug Reportshttps://github.com/waldronlab/terraTCGAdata/issues
Downloads rank203
Source branchRELEASE_3_23
biocViewsDataImport, Infrastructure, Software

Documentation

Download

Dependencies

Depends: AnVILGCP, MultiAssayExperiment

Imports: AnVIL, BiocFileCache, dplyr, GenomicRanges, methods, RaggedExperiment, readr, S4Vectors, stats, tidyr, TCGAutils, utils

Suggests: AnVILBase, GCPtools, knitr, rmarkdown, BiocStyle, withr, testthat (>= 3.0.0)