tanggle
Visualization of Phylogenetic Networks
Bioconductor version: 3.23 · Package version: 1.18.0
Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep (2011) <doi:10.1093/bioinformatics/btq706>.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tanggle")Details
| Maintainer | Klaus Schliep <klaus.schliep@gmail.com> |
| Author | Klaus Schliep [aut, cre] (ORCID: <https://orcid.org/0000-0003-2941-0161>), Marta Vidal-Garcia [aut], Claudia Solis-Lemus [aut] (ORCID: <https://orcid.org/0000-0002-9789-8915>), Leann Biancani [aut], Eren Ada [aut], L. Francisco Henao Diaz [aut], Guangchuang Yu [ctb], Joshua Justison [aut] |
| License | Artistic-2.0 |
| URL | https://klausvigo.github.io/tanggle/, https://github.com/KlausVigo/tanggle |
| Bug Reports | https://github.com/KlausVigo/tanggle/issues |
| Downloads rank | 280 |
| Source branch | RELEASE_3_23 |
| biocViews | Alignment, Clustering, DataImport, MultipleSequenceAlignment, Phylogenetics, Software, Visualization |
Documentation
- tanggle: Visualización de redes filogenéticas con ggplot2
- tanggle: Visualization of phylogenetic networks in a ggplot2 framework
Download
Dependencies
Depends: R (>= 4.1), ggplot2 (>= 3.0.0), ggtree
Imports: ape (>= 5.0), phangorn (>= 2.12), rlang, utils, methods, dplyr