tRNAscanImport

Importing a tRNAscan-SE result file as GRanges object

Bioconductor version: 3.23 · Package version: 1.32.0

The package imports the result of tRNAscan-SE as a GRanges object.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tRNAscanImport")

Maintainer	Felix G.M. Ernst <felix.gm.ernst@outlook.com>
Author	Felix G.M. Ernst [aut, cre] (ORCID: <https://orcid.org/0000-0001-5064-0928>)
License	GPL-3 + file LICENSE
URL	https://github.com/FelixErnst/tRNAscanImport
Bug Reports	https://github.com/FelixErnst/tRNAscanImport/issues
Downloads rank	333
Source branch	RELEASE_3_23
biocViews	DataImport, Preprocessing, Software, Visualization, WorkflowStep

Dependencies

Depends: R (>= 3.5), GenomicRanges, tRNA

Imports: methods, stringr, BiocGenerics, Biostrings, Structstrings, S4Vectors, IRanges, XVector, Seqinfo, rtracklayer, BSgenome, Rsamtools

Suggests: BiocStyle, knitr, rmarkdown, testthat, ggplot2, BSgenome.Scerevisiae.UCSC.sacCer3

Reverse dependencies

Suggests Me (2): Structstrings, tRNA