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tRNA

Analyzing tRNA sequences and structures

Bioconductor version: 3.23 · Package version: 1.30.0

The tRNA package allows tRNA sequences and structures to be accessed and used for subsetting. In addition, it provides visualization tools to compare feature parameters of multiple tRNA sets and correlate them to additional data. The tRNA package uses GRanges objects as inputs requiring only few additional column data sets.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tRNA")

Details

MaintainerFelix GM Ernst <felix.gm.ernst@outlook.com>
AuthorFelix GM Ernst [aut, cre] (ORCID: <https://orcid.org/0000-0001-5064-0928>)
LicenseGPL-3 + file LICENSE
Bug Reportshttps://github.com/FelixErnst/tRNA/issues
Downloads rank378
Source branchRELEASE_3_23
biocViewsSoftware, Visualization

Documentation

Download

Dependencies

Depends: R (>= 3.5), GenomicRanges, Structstrings

Imports: stringr, S4Vectors, methods, BiocGenerics, IRanges, XVector, Biostrings, Modstrings, ggplot2, scales

Suggests: knitr, rmarkdown, testthat, BiocStyle, tRNAscanImport

Reverse dependencies

Depends On Me (2): tRNAdbImport, tRNAscanImport