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synaptome.db

Synamptosome Proteome Database

Bioconductor version: 3.23 · Package version: 0.99.17

The package contains local copy of the Synaptic proteome database. On top of this it provide a set of utility R functions to query and analyse its content. It allows extraction of information for specific genes and building the protein-protein interaction graph for gene sets, synaptic compartments, and brain regions.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("synaptome.db")

Details

MaintainerOksana Sorokina <oksana.sorokina@ed.ac.uk>
AuthorAnatoly Sorokin [aut], Oksana Sorokina [aut, cre], J. Douglas Armstrong [aut]
LicenseArtistic-2.0
Bug Reportshttps://github.com/lptolik/synaptome.db/issues/
Downloads rank89
Source branchRELEASE_3_23
biocViewsAnnotationData, AnnotationHub, CustomDBSchema, FunctionalAnnotation

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Dependencies

Depends: R (>= 3.5.0), synaptome.data

Imports: DBI, RSQLite, dplyr, dbplyr, igraph, Rdpack, AnnotationHub, utils

Suggests: rmarkdown, knitr, pander, testthat, devtools, markdown, ggplot2