svaNUMT

NUMT detection from structural variant calls

Bioconductor version: 3.23 · Package version: 1.18.0

svaNUMT contains functions for detecting NUMT events from structural variant calls. It takes structural variant calls in GRanges of breakend notation and identifies NUMTs by nuclear-mitochondrial breakend junctions. The main function reports candidate NUMTs if there is a pair of valid insertion sites found on the nuclear genome within a certain distance threshold. The candidate NUMTs are reported by events.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("svaNUMT")