splicelogic

splicelogic: differential transcripts to splice events

Bioconductor version: 3.23 · Package version: 1.0.1

Translate differential transcript usage results into discrete splice events.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("splicelogic")

Maintainer	Beatriz Campillo <beatrizcampillo29@gmail.com>
Author	Beatriz Campillo [aut, cre] (ORCID: <https://orcid.org/0000-0001-7323-9125>), Michael Love [aut] (ORCID: <https://orcid.org/0000-0001-8401-0545>), NIH NHGRI [fnd], Wellcome Trust [fnd]
License	MIT + file LICENSE
URL	https://github.com/thelovelab/splicelogic, https://thelovelab.github.io/splicelogic
Bug Reports	https://github.com/thelovelab/splicelogic/issues
Downloads rank	43
Source branch	RELEASE_3_23
biocViews	AlternativeSplicing, Annotation, DifferentialSplicing, FunctionalGenomics, LongRead, RNASeq, Software, Transcriptomics

Dependencies

Depends: R (>= 4.5.0)

Imports: dplyr, magrittr, GenomicRanges, plyranges, tibble, IRanges, S4Vectors, rlang, methods, stats

Suggests: knitr, rmarkdown, testthat (>= 3.0.0), readr, wiggleplotr, GenomicFeatures, AnnotationHub, ggplot2, AnnotationDbi, Seqinfo