spatialSimGP

Simulate Spatial Transcriptomics Data with the Mean-variance Relationship

Bioconductor version: 3.23 · Package version: 1.6.0

This packages simulates spatial transcriptomics data with the mean- variance relationship using a Gaussian Process model per gene.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("spatialSimGP")

Maintainer	Kinnary Shah <kinnaryshahh@gmail.com>
Author	Kinnary Shah [aut, cre] (ORCID: <https://orcid.org/0000-0001-7098-2116>), Boyi Guo [aut] (ORCID: <https://orcid.org/0000-0003-2950-2349>), Stephanie C. Hicks [aut] (ORCID: <https://orcid.org/0000-0002-7858-0231>)
License	MIT + file LICENSE
URL	https://github.com/kinnaryshah/spatialSimGP
Bug Reports	https://github.com/kinnaryshah/spatialSimGP/issues
Downloads rank	155
Source branch	RELEASE_3_23
biocViews	GeneExpression, Software, Spatial, Transcriptomics

Dependencies

Depends: R (>= 4.4)

Imports: SpatialExperiment, MASS, SummarizedExperiment

Suggests: testthat (>= 3.0.0), STexampleData, ggplot2, knitr