spARI

Spatially Aware Adjusted Rand Index for Evaluating Spatial Transcritpomics Clustering

Bioconductor version: 3.23 · Package version: 1.2.0

The R package used in the manuscript "Spatially Aware Adjusted Rand Index for Evaluating Spatial Transcritpomics Clustering".

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("spARI")

Maintainer	Yinqiao Yan <yinqiaoyan@bjut.edu.cn>
Author	Yinqiao Yan [aut, cre], Xiangnan Feng [aut, fnd], Xiangyu Luo [aut, fnd]
License	GPL (>= 2)
Downloads rank	125
Source branch	RELEASE_3_23
biocViews	Clustering, DataImport, GeneExpression, Software, Spatial, Transcriptomics

Dependencies

Depends: R (>= 4.1.0)

Imports: Rcpp, stats, Matrix, SpatialExperiment, SummarizedExperiment, BiocParallel (>= 1.0)

LinkingTo: Rcpp

Suggests: FNN, knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)