shiny.gosling
A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny
Bioconductor version: 3.23 · Package version: 1.8.0
A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization. http://gosling-lang.org/. This R package is based on gosling.js. It uses R functions to create gosling plots that could be embedded onto R Shiny apps.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("shiny.gosling")Details
| Maintainer | Appsilon <opensource@appsilon.com> |
| Author | Appsilon [aut, cre], Anirban Shaw [aut] (ORCID: <https://orcid.org/0000-0003-4021-513X>), Federico Rivadeneira [aut] (ORCID: <https://orcid.org/0000-0001-7818-1225>), Vedha Viyash [aut] |
| License | LGPL-3 |
| Downloads rank | 126 |
| Source branch | RELEASE_3_23 |
| biocViews | Genetics, ShinyApps, Software, Visualization |
Documentation
- Introduction to shiny.gosling
- Using a GRanges object in shiny.gosling
- Creating a Circos Plot with VCF Data
- Creating an Interactive Line Chart with shiny.gosling
- Creating a Multi-Scale Sequence Track
Download
Dependencies
Depends: R (>= 4.1.0)
Imports: htmltools, jsonlite, rlang, shiny, shiny.react, fs, digest, rjson
Suggests: config, covr, knitr, lintr, mockery (>= 0.4.3), rcmdcheck, rmarkdown, sessioninfo, spelling, testthat (>= 3.0.0), GenomicRanges, VariantAnnotation, StructuralVariantAnnotation, biovizBase, ggbio