sfi
Data analysis for Single File Injections (SFIs) mode LC-MS analysis
Bioconductor version: 3.23 · Package version: 1.0.0
Data analysis for Single File Injections(SFIs) mode LC-MS analysis. In SFIs mode, pooled samples are initially injected to serve as reference peaks for subsequent analyses. Repeated injections of individual samples are then performed at fixed time intervals using isocratic elution. This package provides the functions to analyze data from SFIs mode including peak picking and peak reassignment.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sfi") Details
| Maintainer | Miao YU <yufreecas@gmail.com> |
| Author | Miao YU [aut, cre] (ORCID: <https://orcid.org/0000-0002-2804-6014>) |
| License | MIT + file LICENSE |
| URL | https://github.com/yufree/sfi |
| Bug Reports | https://github.com/yufree/sfi/issues/new |
| Downloads rank | 56 |
| Source branch | RELEASE_3_23 |
| biocViews | FeatureExtraction, MassSpectrometry, Metabolomics, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.5.0)
Imports: Rcpp, enviGCMS, stats, mzR, rmarkdown, methods, SummarizedExperiment, S4Vectors
LinkingTo: Rcpp
Suggests: knitr, data.table, BiocStyle, ggplot2, MsCoreUtils, testthat (>= 3.0.0)