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sfi

Data analysis for Single File Injections (SFIs) mode LC-MS analysis

Bioconductor version: 3.23 · Package version: 1.0.0

Data analysis for Single File Injections(SFIs) mode LC-MS analysis. In SFIs mode, pooled samples are initially injected to serve as reference peaks for subsequent analyses. Repeated injections of individual samples are then performed at fixed time intervals using isocratic elution. This package provides the functions to analyze data from SFIs mode including peak picking and peak reassignment.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sfi")

Details

MaintainerMiao YU <yufreecas@gmail.com>
AuthorMiao YU [aut, cre] (ORCID: <https://orcid.org/0000-0002-2804-6014>)
LicenseMIT + file LICENSE
URLhttps://github.com/yufree/sfi
Bug Reportshttps://github.com/yufree/sfi/issues/new
Downloads rank56
Source branchRELEASE_3_23
biocViewsFeatureExtraction, MassSpectrometry, Metabolomics, Software

Documentation

Download

Dependencies

Depends: R (>= 4.5.0)

Imports: Rcpp, enviGCMS, stats, mzR, rmarkdown, methods, SummarizedExperiment, S4Vectors

LinkingTo: Rcpp

Suggests: knitr, data.table, BiocStyle, ggplot2, MsCoreUtils, testthat (>= 3.0.0)