scry
Small-Count Analysis Methods for High-Dimensional Data
Bioconductor version: 3.23 · Package version: 1.24.0
Many modern biological datasets consist of small counts that are not well fit by standard linear-Gaussian methods such as principal component analysis. This package provides implementations of count-based feature selection and dimension reduction algorithms. These methods can be used to facilitate unsupervised analysis of any high-dimensional data such as single-cell RNA-seq.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scry") Details
| Maintainer | Kelly Street <street.kelly@gmail.com> |
| Author | Kelly Street [aut, cre], F. William Townes [aut, cph], Davide Risso [aut], Stephanie Hicks [aut] |
| License | Artistic-2.0 |
| URL | https://bioconductor.org/packages/scry.html |
| Bug Reports | https://github.com/kstreet13/scry/issues |
| Downloads rank | 568 |
| Source branch | RELEASE_3_23 |
| biocViews | DimensionReduction, GeneExpression, Normalization, PrincipalComponent, RNASeq, Sequencing, SingleCell, Software, Transcriptomics |
Documentation
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Dependencies
Depends: R (>= 4.0), stats, methods
Imports: DelayedArray, glmpca (>= 0.2.0), Matrix, SingleCellExperiment, SummarizedExperiment, BiocSingular
Suggests: BiocGenerics, covr, DuoClustering2018, ggplot2, HDF5Array, knitr, markdown, rmarkdown, TENxPBMCData, testthat
Reverse dependencies
Imports Me (1): BatchSVG