screenCounter

Counting Reads in High-Throughput Sequencing Screens

Bioconductor version: 3.23 · Package version: 1.12.0

Provides functions for counting reads from high-throughput sequencing screen data (e.g., CRISPR, shRNA) to quantify barcode abundance. Currently supports single barcodes in single- or paired-end data, and combinatorial barcodes in paired-end data.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("screenCounter")