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scpdata

Single-Cell Proteomics Data Package

Bioconductor version: 3.23 · Package version: 1.20.0

The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scpdata")

Details

MaintainerChristophe Vanderaa <vanderaa.christophe@gmail.com>
AuthorChristophe Vanderaa [aut, cre] (ORCID: <https://orcid.org/0000-0001-7443-5427>), Laurent Gatto [aut] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Enes Ayar [dtc] (ORCID: <https://orcid.org/0000-0001-8881-9800>), Samuel Grégoire [dtc] (ORCID: <https://orcid.org/0000-0002-0900-7677>)
LicenseGPL-2
Downloads rank189
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, ExpressionData, MassSpectrometryData, PackageTypeData, Proteome, ReproducibleResearch, SingleCellData

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Dependencies

Depends: R (>= 4.2.0), QFeatures, ExperimentHub

Imports: utils, AnnotationHub, SingleCellExperiment, S4Vectors

Suggests: scp, magrittr, dplyr, knitr, BiocStyle, BiocCheck, rmarkdown, testthat

Reverse dependencies

Suggests Me (1): scp