scToppR

API Wrapper for ToppGene

Bioconductor version: 3.23 · Package version: 1.0.0

scToppR provides an easy-to-use API wrapper for the ToppGene web platform, used for gene ontology and functional enrichment research. The package also integrates visualization tools, making it a convenient tool directly connecting ToppGene to code-based workflows in R. The tool can also easily save results into different formats.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scToppR")

Details

Maintainer	Bryan Granger <grangerb@musc.edu>
Author	Bryan Granger [aut, cre] (ORCID: <https://orcid.org/0009-0008-6663-3755>)
License	MIT + file LICENSE
URL	https://github.com/BioinformaticsMUSC/scToppR
Bug Reports	https://github.com/BioinformaticsMUSC/scToppR
Downloads rank	54
Source branch	RELEASE_3_23
biocViews	Pathways, SingleCell, Software

Download

Source package

Dependencies

Depends: R (>= 4.5.0)

Imports: dplyr, forcats, ggplot2, stringr, openxlsx, viridis, patchwork, utils, httr2

Suggests: airway, BiocStyle, curl, DESeq2, knitr, rmarkdown, S4Vectors, SingleCellExperiment, SummarizedExperiment, testthat (>= 3.0.0)