scTGIF

Cell type annotation for unannotated single-cell RNA-Seq data

Bioconductor version: 3.23 · Package version: 1.26.0

scTGIF connects the cells and the related gene functions without cell type label.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scTGIF")

Maintainer	Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Author	Koki Tsuyuzaki [aut, cre]
License	Artistic-2.0
Downloads rank	333
Source branch	RELEASE_3_23
biocViews	DimensionReduction, GeneExpression, QualityControl, SingleCell, Software

Dependencies

Depends: R (>= 3.6.0)

Imports: GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr, schex, tibble, ggplot2, igraph

Suggests: testthat

Reverse dependencies

Suggests Me (1): scTensor