scRNAseqApp
A single-cell RNAseq Shiny app-package
Bioconductor version: 3.23 · Package version: 1.12.0
The scRNAseqApp is a Shiny app package designed for interactive visualization of single-cell data. It is an enhanced version derived from the ShinyCell, repackaged to accommodate multiple datasets. The app enables users to visualize data containing various types of information simultaneously, facilitating comprehensive analysis. Additionally, it includes a user management system to regulate database accessibility for different users.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scRNAseqApp") Details
| Maintainer | Jianhong Ou <jou@morgridge.org> |
| Author | Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>) |
| License | GPL-3 |
| URL | https://github.com/jianhong/scRNAseqApp |
| Bug Reports | https://github.com/jianhong/scRNAseqApp/issues |
| Downloads rank | 256 |
| Source branch | RELEASE_3_23 |
| biocViews | RNASeq, SingleCell, Software, Visualization |
Documentation
Download
Dependencies
Depends: R (>= 4.3.0)
Imports: bibtex, bslib, circlize, ComplexHeatmap, colourpicker, data.table, desc, DBI, DT, fs, GenomicRanges, GenomeInfoDb, ggdendro, ggforce, ggnewscale, ggplot2, ggrepel, ggridges, grDevices, grid, gridExtra, htmltools, IRanges, jsonlite, Matrix, magrittr, methods, patchwork, plotly, RColorBrewer, RefManageR, reshape2, rhdf5, Rsamtools, RSQLite, rtracklayer, S4Vectors, scales, scrypt, Seurat, SeuratObject, shiny, shinyhelper, shinymanager, slingshot, SingleCellExperiment, sortable, stats, tools, xfun, xml2, utils
Suggests: rmarkdown, knitr, testthat, BiocStyle, shinytest2
Enhances: celldex, future, SingleR, SummarizedExperiment, tricycle, terra