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scRNAseqApp

A single-cell RNAseq Shiny app-package

Bioconductor version: 3.23 · Package version: 1.12.0

The scRNAseqApp is a Shiny app package designed for interactive visualization of single-cell data. It is an enhanced version derived from the ShinyCell, repackaged to accommodate multiple datasets. The app enables users to visualize data containing various types of information simultaneously, facilitating comprehensive analysis. Additionally, it includes a user management system to regulate database accessibility for different users.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scRNAseqApp")

Details

MaintainerJianhong Ou <jou@morgridge.org>
AuthorJianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>)
LicenseGPL-3
URLhttps://github.com/jianhong/scRNAseqApp
Bug Reportshttps://github.com/jianhong/scRNAseqApp/issues
Downloads rank256
Source branchRELEASE_3_23
biocViewsRNASeq, SingleCell, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.3.0)

Imports: bibtex, bslib, circlize, ComplexHeatmap, colourpicker, data.table, desc, DBI, DT, fs, GenomicRanges, GenomeInfoDb, ggdendro, ggforce, ggnewscale, ggplot2, ggrepel, ggridges, grDevices, grid, gridExtra, htmltools, IRanges, jsonlite, Matrix, magrittr, methods, patchwork, plotly, RColorBrewer, RefManageR, reshape2, rhdf5, Rsamtools, RSQLite, rtracklayer, S4Vectors, scales, scrypt, Seurat, SeuratObject, shiny, shinyhelper, shinymanager, slingshot, SingleCellExperiment, sortable, stats, tools, xfun, xml2, utils

Suggests: rmarkdown, knitr, testthat, BiocStyle, shinytest2

Enhances: celldex, future, SingleR, SummarizedExperiment, tricycle, terra