scRNAseq
Collection of Public Single-Cell RNA-Seq Datasets
Bioconductor version: 3.23 · Package version: 2.26.0
Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scRNAseq")Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Davide Risso [aut, cph], Michael Cole [aut], Aaron Lun [ctb, cre], Alan O'Callaghan [ctb], Jens Preussner [ctb], Charlotte Soneson [ctb], Stephany Orjuela [ctb], Daniel Bunis [ctb], Milan Malfait [ctb] |
| License | CC0 |
| Downloads rank | 2044 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData |
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Dependencies
Depends: SingleCellExperiment
Imports: utils, methods, Matrix, BiocGenerics, S4Vectors, SparseArray, DelayedArray, GenomicRanges, SummarizedExperiment, ExperimentHub (>= 2.3.4), AnnotationHub (>= 3.3.6), AnnotationDbi, ensembldb, GenomicFeatures, alabaster.base, alabaster.matrix, alabaster.sce, gypsum, jsonlite, DBI, RSQLite
Suggests: BiocStyle, knitr, rmarkdown, testthat, jsonvalidate, BiocManager
Reverse dependencies
Imports Me (1): singleCellTK
Suggests Me (47): APL, BASiCS, batchelor, bluster, ccImpute, CellMentor, ClusterFoldSimilarity, Coralysis, CSOA, destiny, dittoSeq, Glimma, GSABenchmark, hammers, iSEE, iSEEfier, iSEEhex, iSEEindex, iSEEu, LISTO, looking4clusters, miloR, miQC, mumosa, ReactomeGSA, scAnnotatR, scater, scDblFinder, scDiagnostics, scDotPlot, scECODA, scFeatureFilter, scLang, scone, scran, scrapper, scTreeViz, scuttle, SingleCellExperiment, SingleR, speakeasyR, SplineDV, StatescopeR, UCell, velociraptor, zellkonverter, zinbwave