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scMultiome

Collection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets

Bioconductor version: 3.23 · Package version: 1.12.0

Single cell multiome data, containing chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) information analyzed with the ArchR package and presented as MultiAssayExperiment objects.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scMultiome")

Details

MaintainerXiaosai Yao <xiaosai.yao@gmail.com>
AuthorXiaosai Yao [cre, aut] (ORCID: <https://orcid.org/0000-0001-9729-0726>), Aleksander Chlebowski [aut], Aaron Lun [aut], Shiqi Xie [ctb], Tomasz Włodarczyk [aut]
LicenseCC BY-SA 4.0
Downloads rank117
Source branchRELEASE_3_23
biocViewsCellCulture, ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, PackageTypeData, SequencingData, SingleCellData, Tissue

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Dependencies

Depends: AnnotationHub, ExperimentHub (>= 2.8.1), MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment

Imports: AzureStor, GenomicRanges, HDF5Array, S4Vectors, checkmate, methods, rhdf5, alabaster.matrix

Suggests: BiocGenerics, IRanges, Matrix, knitr, rmarkdown, rstudioapi, testthat (>= 3.0.0), devtools, BiocStyle, ExperimentHubData

Reverse dependencies

Suggests Me (2): epiregulon, epiregulon.extra