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rnaEditr

Statistical analysis of RNA editing sites and hyper-editing regions

Bioconductor version: 3.23 · Package version: 1.22.0

RNAeditr analyzes site-specific RNA editing events, as well as hyper-editing regions. The editing frequencies can be tested against binary, continuous or survival outcomes. Multiple covariate variables as well as interaction effects can also be incorporated in the statistical models.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rnaEditr")

Details

MaintainerLanyu Zhang <jennyzly2016@gmail.com>
AuthorLanyu Zhang [aut, cre], Gabriel Odom [aut], Tiago Silva [aut], Lissette Gomez [aut], Lily Wang [aut]
LicenseGPL-3
URLhttps://github.com/TransBioInfoLab/rnaEditr
Bug Reportshttps://github.com/TransBioInfoLab/rnaEditr/issues
Downloads rank262
Source branchRELEASE_3_23
biocViewsDimensionReduction, Epigenetics, FeatureExtraction, GeneTarget, RNASeq, Regression, Software, Survival

Documentation

Download

Dependencies

Depends: R (>= 4.0)

Imports: GenomicRanges, IRanges, BiocGenerics, Seqinfo, bumphunter, S4Vectors, stats, survival, logistf, plyr, corrplot

Suggests: knitr, rmarkdown, testthat