rmelting

R Interface to MELTING 5

Bioconductor version: 3.23 · Package version: 1.28.0

R interface to the MELTING 5 program (https://www.ebi.ac.uk/biomodels/tools/melting/) to compute melting temperatures of nucleic acid duplexes along with other thermodynamic parameters.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rmelting")

Details

Maintainer	J. Aravind <j.aravind@icar.gov.in>
Author	J. Aravind [aut, cre] (ORCID: <https://orcid.org/0000-0002-4791-442X>), G. K. Krishna [aut], Bob Rudis [ctb] (melting5jars), Nicolas Le Novère [ctb] (MELTING 5 Java Library), Marine Dumousseau [ctb] (MELTING 5 Java Library), William John Gowers [ctb] (MELTING 5 Java Library)
License	GPL-2 \| GPL-3
URL	https://github.com/aravind-j/rmelting, https://aravind-j.github.io/rmelting/
Bug Reports	https://github.com/aravind-j/rmelting/issues
System Requirements	Java
Downloads rank	242
Source branch	RELEASE_3_23
biocViews	BiomedicalInformatics, Cheminformatics, Software

Documentation

Computation of melting temperature of nucleic acid duplexes with rmelting

Download

Source package

Dependencies

Depends: R (>= 3.6)

Imports: Rdpack, rJava (>= 0.9-8)

Suggests: readxl, knitr, rmarkdown, reshape2, pander, testthat