rigvf

R interface to the IGVF Catalog

Bioconductor version: 3.23 · Package version: 1.4.0

The IGVF Catalog provides data on the impact of genomic variants on function. The `rigvf` package provides an interface to the IGVF Catalog, allowing easy integration with Bioconductor resources.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rigvf")

Details

Maintainer	Michael Love <michaelisaiahlove@gmail.com>
Author	Martin Morgan [aut] (ORCID: <https://orcid.org/0000-0002-5874-8148>), Michael Love [aut, cre] (ORCID: <https://orcid.org/0000-0001-8401-0545>), NIH NHGRI UM1HG012003 [fnd]
License	MIT + file LICENSE
URL	https://IGVF.github.io/rigvf
Bug Reports	https://github.com/IGVF/rigvf/issues
Downloads rank	144
Source branch	RELEASE_3_23
biocViews	Annotation, FunctionalGenomics, GeneRegulation, GeneTarget, GenomicVariation, Software, ThirdPartyClient, VariantAnnotation

Documentation

Accessing data from the IGVF Catalog

Download

Source package

Dependencies

Depends: R (>= 4.1.0)

Imports: methods, httr2, rjsoncons, dplyr, tidyr, rlang, memoise, cachem, whisker, jsonlite, GenomicRanges, IRanges, Seqinfo

Suggests: knitr, rmarkdown, testthat (>= 3.0.0), plyranges, plotgardener, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, tibble