rifiComparative
'rifiComparative' compares the output of rifi from two different conditions.
Bioconductor version: 3.23 · Package version: 1.12.0
'rifiComparative' is a continuation of rifi package. It compares two conditions output of rifi using half-life and mRNA at time 0 segments. As an input for the segmentation, the difference between half-life of both condtions and log2FC of the mRNA at time 0 are used. The package provides segmentation, statistics, summary table, fragments visualization and some additional useful plots for further anaylsis.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rifiComparative")Details
| Maintainer | Loubna Youssar <lyoussar@gmail.com> |
| Author | Loubna Youssar [aut, cre], Jens cre Georg [aut] |
| License | GPL-3 + file LICENSE |
| Bug Reports | https://github.com/CyanolabFreiburg/rifiComparative |
| Downloads rank | 184 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialExpression, GeneRegulation, Microarray, RNASeq, Software, Transcriptomics |