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rfaRm

An R interface to the Rfam database

Bioconductor version: 3.23 · Package version: 1.24.1

rfaRm provides a client interface to the Rfam database of RNA families. Data that can be retrieved include RNA families, secondary structure images, covariance models, sequences within each family, alignments leading to the identification of a family and secondary structures in the dot-bracket format.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rfaRm")

Details

MaintainerLara Selles Vidal <lara.selles@oist.jp>, Rafael Ayala <rafael.ayala@oist.jp>
AuthorLara Selles Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro
LicenseGPL-3
Downloads rank274
Source branchRELEASE_3_23
biocViewsDataImport, FunctionalGenomics, MultipleSequenceAlignment, Software, ThirdPartyClient, Visualization

Documentation

Download

Dependencies

Imports: httr, stringi, rsvg, magick, data.table, Biostrings, utils, rvest, xml2, IRanges, S4Vectors

Suggests: R4RNA, treeio, knitr, BiocStyle, rmarkdown, BiocGenerics, RUnit