rSWeeP

Spaced Words Projection (SWeeP)

Bioconductor version: 3.23 · Package version: 1.24.0

"Spaced Words Projection (SWeeP)" is a method for representing biological sequences using vectors preserving inter-sequence comparability.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rSWeeP")

Maintainer	Camila P Perico <camilapp94@gmail.com>
Author	Camila Pereira Perico [com, cre, aut, cph] (ORCID: <https://orcid.org/0000-0003-0186-4022>), Danrley Rafael Fernandes [aut], Mariane Gonçalves Kulik [aut] (ORCID: <https://orcid.org/0009-0000-5432-3524>), Júlia Formighieri Varaschin [aut], Camilla Reginatto de Pierri [aut] (ORCID: <https://orcid.org/0000-0002-6114-1734>), Ricardo Assunção Vialle [aut] (ORCID: <https://orcid.org/0000-0003-3311-4197>), Roberto Tadeu Raittz [aut, cph] (ORCID: <https://orcid.org/0000-0002-5271-991X>)
License	GPL (>= 2)
Downloads rank	256
Source branch	RELEASE_3_23
biocViews	Software

Dependencies

Depends: foreach, doParallel, parallel, Biostrings, methods, utils

Imports: tools, stringi

Suggests: Rtsne, ape, Seurat, knitr, rmarkdown, tictoc, BiocStyle, testthat (>= 3.0.0)