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rGenomeTracks

Integerated visualization of epigenomic data

Bioconductor version: 3.23 · Package version: 1.18.0

rGenomeTracks package leverages the power of pyGenomeTracks software with the interactivity of R. pyGenomeTracks is a python software that offers robust method for visualizing epigenetic data files like narrowPeak, Hic matrix, TADs and arcs, however though, here is no way currently to use it within R interactive session. rGenomeTracks wrapped the whole functionality of pyGenomeTracks with additional utilites to make to more pleasant for R users.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rGenomeTracks")

Details

MaintainerOmar Elashkar <omar.i.elashkar@gmail.com>
AuthorOmar Elashkar [aut, cre] (ORCID: <https://orcid.org/0000-0002-5505-778X>)
LicenseGPL-3
System RequirementspyGenomeTracks (prefered to use install_pyGenomeTracks())
Downloads rank195
Source branchRELEASE_3_23
biocViewsHiC, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.1.0)

Imports: imager, reticulate, methods, rGenomeTracksData

Suggests: rmarkdown, knitr, testthat (>= 3.0.0)