rGenomeTracks
Integerated visualization of epigenomic data
Bioconductor version: 3.23 · Package version: 1.18.0
rGenomeTracks package leverages the power of pyGenomeTracks software with the interactivity of R. pyGenomeTracks is a python software that offers robust method for visualizing epigenetic data files like narrowPeak, Hic matrix, TADs and arcs, however though, here is no way currently to use it within R interactive session. rGenomeTracks wrapped the whole functionality of pyGenomeTracks with additional utilites to make to more pleasant for R users.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rGenomeTracks") Details
| Maintainer | Omar Elashkar <omar.i.elashkar@gmail.com> |
| Author | Omar Elashkar [aut, cre] (ORCID: <https://orcid.org/0000-0002-5505-778X>) |
| License | GPL-3 |
| System Requirements | pyGenomeTracks (prefered to use install_pyGenomeTracks()) |
| Downloads rank | 195 |
| Source branch | RELEASE_3_23 |
| biocViews | HiC, Software, Visualization |
Documentation
Download
Dependencies
Depends: R (>= 4.1.0)
Imports: imager, reticulate, methods, rGenomeTracksData
Suggests: rmarkdown, knitr, testthat (>= 3.0.0)