qsmooth
Smooth quantile normalization
Bioconductor version: 3.23 · Package version: 1.28.0
Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("qsmooth")Details
| Maintainer | Stephanie C. Hicks <shicks19@jhu.edu> |
| Author | Stephanie C. Hicks [aut, cre] (ORCID: <https://orcid.org/0000-0002-7858-0231>), Kwame Okrah [aut], Koen Van den Berge [ctb], Hector Corrada Bravo [aut] (ORCID: <https://orcid.org/0000-0002-1255-4444>), Rafael Irizarry [aut] (ORCID: <https://orcid.org/0000-0002-3944-4309>) |
| License | GPL-3 |
| Downloads rank | 346 |
| Source branch | RELEASE_3_23 |
| biocViews | BatchEffect, Microarray, MultipleComparison, Normalization, Preprocessing, RNASeq, Sequencing, Software |
Documentation
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Dependencies
Depends: R (>= 4.0)
Imports: SummarizedExperiment, utils, sva, stats, methods, graphics, Hmisc
Suggests: bodymapRat, quantro, knitr, rmarkdown, BiocStyle, testthat