qPLEXanalyzer

Tools for quantitative proteomics data analysis

Bioconductor version: 3.23 · Package version: 1.30.0

Tools for TMT based quantitative proteomics data analysis.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qPLEXanalyzer")

Maintainer	Ashley Sawle <ads2202cu@gmail.com>
Author	Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]
License	GPL-2
Bug Reports	https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues
Downloads rank	325
Source branch	RELEASE_3_23
biocViews	DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software

Dependencies

Depends: R (>= 4.0), Biobase, MSnbase

Imports: assertthat, BiocGenerics, Biostrings, dplyr (>= 1.0.0), ggdendro, ggplot2, graphics, grDevices, IRanges, limma, magrittr, MSnbase, preprocessCore, purrr, RColorBrewer, readr, rlang, scales, stats, stringr, tibble, tidyr, tidyselect, utils

Suggests: patchwork, knitr, MSnbase, qPLEXdata, rmarkdown, statmod, testthat, UniProt.ws, vdiffr

Reverse dependencies

Depends On Me (1): qPLEXdata