progeny
Pathway RespOnsive GENes for activity inference from gene expression
Bioconductor version: 3.23 · Package version: 1.34.0
PROGENy is resource that leverages a large compendium of publicly available signaling perturbation experiments to yield a common core of pathway responsive genes for human and mouse. These, coupled with any statistical method, can be used to infer pathway activities from bulk or single-cell transcriptomics.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("progeny")Details
| Maintainer | Aurélien Dugourd <aurelien.dugourd@bioquant.uni-heidelberg.de> |
| Author | Michael Schubert [aut], Alberto Valdeolivas [ctb] (ORCID: <https://orcid.org/0000-0001-5482-9023>), Christian H. Holland [ctb] (ORCID: <https://orcid.org/0000-0002-3060-5786>), Igor Bulanov [ctb], Aurélien Dugourd [cre, ctb] |
| License | Apache License (== 2.0) | file LICENSE |
| URL | https://github.com/saezlab/progeny |
| Bug Reports | https://github.com/saezlab/progeny/issues |
| Downloads rank | 1217 |
| Source branch | RELEASE_3_23 |
| biocViews | FunctionalPrediction, GeneExpression, GeneRegulation, Software, SystemsBiology |