posDemux

Positional combinatorial sequence demultiplexer

Bioconductor version: 3.23 · Package version: 1.0.0

Demultiplexing and filtering utilities intended for reads with combinatorial barcodes (i.e. PETRI-seq and SPLiT-seq). The demultiplexer algorithm uses the position of the segments to extract and compare the barcodes with the reference (whitelist). A Shiny application is provided to interactively select cutoffs for which barcode combinations to keep.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("posDemux")