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plyxp

Data masks for SummarizedExperiment enabling dplyr-like manipulation

Bioconductor version: 3.23 · Package version: 1.6.1

The package provides `rlang` data masks for the SummarizedExperiment class. The enables the evaluation of unquoted expression in different contexts of the SummarizedExperiment object with optional access to other contexts. The goal for `plyxp` is for evaluation to feel like a data.frame object without ever needing to unwind to a rectangular data.frame.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plyxp")

Details

MaintainerJustin Landis <jtlandis314@gmail.com>
AuthorJustin Landis [aut, cre] (ORCID: <https://orcid.org/0000-0001-5501-4934>), Michael Love [aut] (ORCID: <https://orcid.org/0000-0001-8401-0545>)
LicenseMIT + file LICENSE
URLhttps://github.com/jtlandis/plyxp, https://jtlandis.github.io/plyxp
Bug Reportshttps://www.github.com/jtlandis/plyxp/issues
Downloads rank288
Source branchRELEASE_3_23
biocViewsAnnotation, GenomeAnnotation, Software, Transcriptomics

Documentation

Download

Dependencies

Depends: R (>= 4.5.0)

Imports: dplyr, purrr, rlang, SummarizedExperiment, tidyr, tidyselect, vctrs, tibble, pillar, cli, glue, S7, S4Vectors, utils, methods

Suggests: devtools, knitr, rmarkdown, testthat, airway, IRanges, here

Reverse dependencies

Imports Me (1): tidySummarizedExperiment