plyinteractions
Extending tidy verbs to genomic interactions
Bioconductor version: 3.23 · Package version: 1.10.0
Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plyinteractions")Details
| Maintainer | Jacques Serizay <jacquesserizay@gmail.com> |
| Author | Jacques Serizay [aut, cre] |
| License | Artistic-2.0 |
| URL | https://github.com/js2264/plyinteractions |
| Bug Reports | https://github.com/js2264/plyinteractions/issues |
| Downloads rank | 234 |
| Source branch | RELEASE_3_23 |
| biocViews | Infrastructure, Software |
Documentation
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Dependencies
Depends: R (>= 4.3.0), InteractionSet, plyranges
Imports: Seqinfo, BiocGenerics, GenomicRanges, IRanges, S4Vectors, rlang, dplyr, tibble, tidyselect, methods, utils
Suggests: tidyverse, BSgenome.Mmusculus.UCSC.mm10, Biostrings, BiocParallel, GenomeInfoDb, scales, HiContactsData, rtracklayer, BiocStyle, covr, knitr, rmarkdown, sessioninfo, testthat (>= 3.0.0), RefManageR