plotgardener
Coordinate-Based Genomic Visualization Package for R
Bioconductor version: 3.23 · Package version: 1.18.0
Coordinate-based genomic visualization package for R. It grants users the ability to programmatically produce complex, multi-paneled figures. Tailored for genomics, plotgardener allows users to visualize large complex genomic datasets and provides exquisite control over how plots are placed and arranged on a page.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plotgardener")Details
| Maintainer | Nicole Kramer <nekramer27@gmail.com>, Douglas Phanstiel <douglas_phanstiel@med.unc.edu> |
| Author | Nicole Kramer [aut, cre], Eric S. Davis [aut], Craig Wenger [aut], Sarah Parker [ctb], Erika Deoudes [art], Michael Love [ctb], Douglas H. Phanstiel [aut, cre, cph] |
| License | MIT + file LICENSE |
| URL | https://phanstiellab.github.io/plotgardener, https://github.com/PhanstielLab/plotgardener |
| Bug Reports | https://github.com/PhanstielLab/plotgardener/issues |
| Downloads rank | 448 |
| Source branch | RELEASE_3_23 |
| biocViews | FunctionalGenomics, GenomeAnnotation, GenomeAssembly, HiC, Software, Visualization |
Documentation
Download
Dependencies
Depends: R (>= 4.2.0)
Imports: curl, data.table, dplyr, GenomeInfoDb, GenomicRanges, glue, grDevices, grid, ggplotify, IRanges, methods, plyranges, purrr, Rcpp, RColorBrewer, rhdf5, rlang, stats, strawr, tools, utils, withr
LinkingTo: Rcpp
Suggests: AnnotationDbi, AnnotationHub, BSgenome, BSgenome.Hsapiens.UCSC.hg19, ComplexHeatmap, GenomicFeatures, ggplot2, InteractionSet, knitr, org.Hs.eg.db, rtracklayer, plotgardenerData, pdftools, png, rmarkdown, scales, showtext, testthat (>= 3.0.0), TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene