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plgem

Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)

Bioconductor version: 3.23 · Package version: 1.84.0

The Power Law Global Error Model (PLGEM) has been shown to faithfully model the variance-versus-mean dependence that exists in a variety of genome-wide datasets, including microarray and proteomics data. The use of PLGEM has been shown to improve the detection of differentially expressed genes or proteins in these datasets.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plgem")

Details

MaintainerNorman Pavelka <normanpavelka@gmail.com>
AuthorMattia Pelizzola <mattia.pelizzola@gmail.com> and Norman Pavelka <normanpavelka@gmail.com>
LicenseGPL-2
URLhttp://www.genopolis.it
Downloads rank521
Source branchRELEASE_3_23
biocViewsDifferentialExpression, GeneExpression, ImmunoOncology, MassSpectrometry, Microarray, Proteomics, Software

Documentation

Download

Dependencies

Depends: R (>= 2.10)

Imports: utils, Biobase (>= 2.5.5), MASS, methods

Reverse dependencies

Imports Me (1): INSPEcT