piano
Platform for integrative analysis of omics data
Bioconductor version: 3.23 · Package version: 2.28.0
Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("piano") Details
| Maintainer | Leif Varemo Wigge <piano.rpkg@gmail.com> |
| Author | Leif Varemo Wigge <piano.rpkg@gmail.com> and Intawat Nookaew <piano.rpkg@gmail.com> |
| License | GPL (>=2) |
| URL | http://www.sysbio.se/piano |
| Bug Reports | https://github.com/varemo/piano/issues |
| Downloads rank | 903 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Pathways, Preprocessing, QualityControl, Software, Visualization |
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Dependencies
Depends: R (>= 3.5)
Imports: BiocGenerics, Biobase, gplots, igraph, relations, marray, fgsea, shiny, DT, htmlwidgets, shinyjs, shinydashboard, visNetwork, scales, grDevices, graphics, stats, utils, methods
Suggests: yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt, snowfall, AnnotationDbi, knitr, rmarkdown, BiocStyle
Reverse dependencies
Imports Me (3): CoreGx, PDATK, SmartPhos
Suggests Me (1): BloodCancerMultiOmics2017