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piano

Platform for integrative analysis of omics data

Bioconductor version: 3.23 · Package version: 2.28.0

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("piano")

Details

MaintainerLeif Varemo Wigge <piano.rpkg@gmail.com>
AuthorLeif Varemo Wigge <piano.rpkg@gmail.com> and Intawat Nookaew <piano.rpkg@gmail.com>
LicenseGPL (>=2)
URLhttp://www.sysbio.se/piano
Bug Reportshttps://github.com/varemo/piano/issues
Downloads rank903
Source branchRELEASE_3_23
biocViewsDifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Pathways, Preprocessing, QualityControl, Software, Visualization

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Dependencies

Depends: R (>= 3.5)

Imports: BiocGenerics, Biobase, gplots, igraph, relations, marray, fgsea, shiny, DT, htmlwidgets, shinyjs, shinydashboard, visNetwork, scales, grDevices, graphics, stats, utils, methods

Suggests: yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt, snowfall, AnnotationDbi, knitr, rmarkdown, BiocStyle

Reverse dependencies

Imports Me (3): CoreGx, PDATK, SmartPhos

Suggests Me (1): BloodCancerMultiOmics2017