periodicDNA

Set of tools to identify periodic occurrences of k-mers in DNA sequences

Bioconductor version: 3.23 · Package version: 1.22.0

This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) present periodically in a set of genomic loci (typically regulatory elements). The functions of this package provide a straightforward approach to find periodic occurrences of k-mers in DNA sequences, such as regulatory elements. It is not aimed at identifying motifs separated by a conserved distance; for this type of analysis, please visit MEME website.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("periodicDNA")