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pageRank

Temporal and Multiplex PageRank for Gene Regulatory Network Analysis

Bioconductor version: 3.23 · Package version: 1.22.0

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pageRank")

Details

MaintainerHongxu Ding <hd2326@columbia.edu>
AuthorHongxu Ding [aut, cre, ctb, cph]
LicenseGPL-2
URLhttps://github.com/hd2326/pageRank
Bug Reportshttps://github.com/hd2326/pageRank/issues
Downloads rank224
Source branchRELEASE_3_23
biocViewsGeneTarget, Network, Software, StatisticalMethod

Documentation

Download

Dependencies

Depends: R (>= 4.0)

Imports: GenomicRanges, igraph, motifmatchr, stats, utils, grDevices, graphics

Suggests: bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, TFBSTools, GenomicFeatures, annotate