packFinder

de novo Annotation of Pack-TYPE Transposable Elements

Bioconductor version: 3.23 · Package version: 1.24.0

Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("packFinder")