Bioc2026 Registration Open!

omXplore

Vizualization tools for 'omics' datasets with R

Bioconductor version: 3.23 · Package version: 1.6.0

This package contains a collection of functions (written as shiny modules) for the visualisation and the statistical analysis of omics data. These plots can be displayed individually or embedded in a global Shiny module. Additionaly, it is possible to integrate third party modules to the main interface of the package omXplore.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("omXplore")

Details

MaintainerSamuel Wieczorek <samuel.wieczorek@cea.fr>
AuthorSamuel Wieczorek [aut, cre] (ORCID: <https://orcid.org/0000-0002-5016-1203>), Thomas Burger [aut], Enora Fremy [ctb], Cyril Ariztegui [ctb], Manon Gaudin [ctb]
LicenseArtistic-2.0
URLhttps://github.com/edyp-lab/omXplore, https://edyp-lab.github.io/omXplore/
Bug Reportshttps://github.com/edyp-lab/omXplore/issues
Downloads rank212
Source branchRELEASE_3_23
biocViewsDataRepresentation, GUI, MassSpectrometry, QualityControl, ShinyApps, Software

Documentation

Download

Dependencies

Depends: R (>= 4.5.0), methods

Imports: DT, shiny, MSnbase, PSMatch, SummarizedExperiment, MultiAssayExperiment, shinyBS, shinyjs, shinyjqui, RColorBrewer, gplots, plotly, visNetwork, tibble, grDevices, stats, utils, htmlwidgets, vioplot, graphics, FactoMineR, dendextend, dplyr, factoextra, tidyr, nipals, Biobase

Suggests: knitr, rmarkdown, BiocStyle, testthat, Matrix, graph