omXplore
Vizualization tools for 'omics' datasets with R
Bioconductor version: 3.23 · Package version: 1.6.0
This package contains a collection of functions (written as shiny modules) for the visualisation and the statistical analysis of omics data. These plots can be displayed individually or embedded in a global Shiny module. Additionaly, it is possible to integrate third party modules to the main interface of the package omXplore.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("omXplore") Details
| Maintainer | Samuel Wieczorek <samuel.wieczorek@cea.fr> |
| Author | Samuel Wieczorek [aut, cre] (ORCID: <https://orcid.org/0000-0002-5016-1203>), Thomas Burger [aut], Enora Fremy [ctb], Cyril Ariztegui [ctb], Manon Gaudin [ctb] |
| License | Artistic-2.0 |
| URL | https://github.com/edyp-lab/omXplore, https://edyp-lab.github.io/omXplore/ |
| Bug Reports | https://github.com/edyp-lab/omXplore/issues |
| Downloads rank | 212 |
| Source branch | RELEASE_3_23 |
| biocViews | DataRepresentation, GUI, MassSpectrometry, QualityControl, ShinyApps, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.5.0), methods
Imports: DT, shiny, MSnbase, PSMatch, SummarizedExperiment, MultiAssayExperiment, shinyBS, shinyjs, shinyjqui, RColorBrewer, gplots, plotly, visNetwork, tibble, grDevices, stats, utils, htmlwidgets, vioplot, graphics, FactoMineR, dendextend, dplyr, factoextra, tidyr, nipals, Biobase
Suggests: knitr, rmarkdown, BiocStyle, testthat, Matrix, graph