notameStats
Workflow for non-targeted LC-MS metabolic profiling
Bioconductor version: 3.23 · Package version: 1.2.0
Provides univariate and multivariate statistics for feature prioritization in untargeted LC-MS metabolomics research.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("notameStats")Details
| Maintainer | Vilhelm Suksi <vksuks@utu.fi> |
| Author | Anton Klåvus [aut, cph] (ORCID: <https://orcid.org/0000-0003-2612-0230>), Jussi Paananen [aut, cph] (ORCID: <https://orcid.org/0000-0001-5100-4907>), Oskari Timonen [aut, cph] (ORCID: <https://orcid.org/0000-0002-6317-6260>), Atte Lihtamo [aut], Vilhelm Suksi [aut, cre] (ORCID: <https://orcid.org/0009-0005-1108-518X>), Retu Haikonen [aut] (ORCID: <https://orcid.org/0000-0003-0830-3850>), Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>), Kati Hanhineva [aut] (ORCID: <https://orcid.org/0000-0001-6834-7375>), Ville Koistinen [ctb] (ORCID: <https://orcid.org/0000-0003-1587-8361>), Olli Kärkkäinen [ctb] (ORCID: <https://orcid.org/0000-0003-0825-4956>), Artur Sannikov [ctb] |
| License | MIT + file LICENSE |
| URL | https://github.com/hanhineva-lab/notameStats |
| Bug Reports | https://github.com/hanhineva-lab/notameStats/issues |
| Downloads rank | 109 |
| Source branch | RELEASE_3_23 |
| biocViews | BatchEffect, BiomedicalInformatics, DataImport, MassSpectrometry, Metabolomics, MultipleComparison, Normalization, Preprocessing, QualityControl, Software, Visualization |
Documentation
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Dependencies
Depends: R (>= 4.5.0), SummarizedExperiment
Imports: BiocGenerics, BiocParallel, broom, dplyr, methods, notame, stats, tibble, tidyr, utils
Suggests: BiocStyle, car, knitr, lmerTest, missForest, mixOmics, MuMIn, MUVR2, notameViz, PERMANOVA, PK, randomForest, rmcorr, testthat