ngsReports
Load FastqQC reports and other NGS related files
Bioconductor version: 3.23 · Package version: 2.14.0
This package provides methods and object classes for parsing FastQC reports and output summaries from other NGS tools into R. As well as parsing files, multiple plotting methods have been implemented for visualising the parsed data. Plots can be generated as static ggplot objects or interactive plotly objects.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ngsReports") Details
| Maintainer | Stevie Pederson <stephen.pederson.au@gmail.com> |
| Author | Stevie Pederson [aut, cre] (ORCID: <https://orcid.org/0000-0001-8197-3303>), Christopher Ward [aut], Thu-Hien To [aut] |
| License | LGPL-3 |
| URL | https://github.com/smped/ngsReports |
| Bug Reports | https://github.com/smped/ngsReports/issues |
| Downloads rank | 323 |
| Source branch | RELEASE_3_23 |
| biocViews | QualityControl, ReportWriting, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.2.0), BiocGenerics, ggplot2 (>= 4.0.0), patchwork (>= 1.1.1), tibble (>= 1.3.1)
Imports: Biostrings, checkmate, dplyr (>= 1.1.0), forcats, ggdendro, grDevices (>= 3.6.0), grid, jsonlite, lifecycle, lubridate, methods, plotly (>= 4.9.4), rlang, rmarkdown, scales, stats, stringr, tidyr, tidyselect (>= 0.2.3), utils, zoo
Suggests: BiocStyle, Cairo, DT, knitr, pander, readr, testthat, truncnorm