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netprioR

A model for network-based prioritisation of genes

Bioconductor version: 3.23 · Package version: 1.38.0

A model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netprioR")

Details

MaintainerFabian Schmich <fabian.schmich@bsse.ethz.ch>
AuthorFabian Schmich
LicenseGPL-3
URLhttp://bioconductor.org/packages/netprioR
StatusDeprecated
Downloads rank240
Source branchRELEASE_3_23
biocViewsCellBasedAssays, ImmunoOncology, Network, Preprocessing, Software

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Dependencies

Depends: methods, graphics, R (>= 3.3)

Imports: stats, Matrix, dplyr, doParallel, foreach, parallel, sparseMVN, ggplot2, gridExtra, pROC

Suggests: knitr, BiocStyle, pander