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ndexr

NDEx R client library

Bioconductor version: 3.23 · Package version: 1.34.0

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ndexr")

Details

MaintainerFlorian Auer <florian.auer@informatik.uni-augsburg.de>
AuthorFlorian Auer [cre, aut] (ORCID: <https://orcid.org/0000-0002-5320-8900>), Frank Kramer [ctb], Alex Ishkin [ctb], Dexter Pratt [ctb]
LicenseBSD_3_clause + file LICENSE
URLhttps://github.com/frankkramer-lab/ndexr
Bug Reportshttps://github.com/frankkramer-lab/ndexr/issues
Downloads rank260
Source branchRELEASE_3_23
biocViewsDataImport, Network, Pathways, Software

Documentation

Download

Dependencies

Depends: RCX

Imports: httr, jsonlite, plyr, tidyr

Suggests: BiocStyle, testthat, knitr, rmarkdown